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Creators/Authors contains: "Gozem, Samer"

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  1. We report two novel pro-fluorescent, ethynylthiophene-basedo-nitrobenzyl photolabile protecting groups that absorb visible light and enable real-time visualization of hydroxamic acid release through a fluorescent nitrosoketone by-product. 
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    Free, publicly-accessible full text available August 6, 2026
  2. Free, publicly-accessible full text available November 12, 2025
  3. Abstract Upon blue‐light absorption, LOV domains efficiently undergo intersystem crossing (ISC) to the triplet state. Several factors potentially contribute to this efficiency. One often proposed in the literature is the heavy atom effect of the nearby (and eventually adduct‐forming) cysteine. However, some LOV domain derivatives that lack the cysteine residue also undergo ISC efficiently. Using hybrid multireference quantum mechanical/molecular mechanical (QM / MM) models, we investigated the effect of the electrostatic environment in a prototypal LOV domain,Arabidopsis thalianaPhototropin 1 LOV2 (AtLOV2), compared to the effect of the dielectric of an aqueous solution. We find that the electrostatic environment of AtLOV2 is especially well tuned to stabilize a triplet state, which we posit is the state involved in the ISC step. Other low‐lying triplet states that have and character are ruled out on the basis of energetics and/or their orbital character. The mechanistic picture that emerges from the calculations is one that involves the ISC of photoexcited flavin to a triplet state followed by rapid internal conversion to a triplet state, which is the state detected spectroscopically. This insight into the ISC mechanism can provide guidelines for tuning flavin's photophysics through mutations that alter the protein electrostatic environment and potentially helps to explain why ISC (and subsequent flavin photochemistry) does not occur readily in many classes of flavin‐binding enzymes. 
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  4. A rare cuprous triangle featuring a reactive organocopper site is captured by a new flexible bis(amidinate) ligand from the oligomeric mesitylcopper framework and interconverts with another equivalent of ligand into a tetracuprous Möbius strip. 
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  5. FTIR spectroscopy accompanied by quantum chemical simulations can reveal important information about molecular structure and intermolecular interactions in the condensed phase. Simulations typically account for the solvent either through cluster quantum mechanical (QM) models, polarizable continuum models (PCM), or hybrid quantum mechanical/molecular mechanical (QM/MM) models. Recently, we studied the effect of aqueous solvent interactions on the vibrational frequencies of lumiflavin, a minimal flavin model, using cluster QM and PCM models. Those models successfully reproduced the relative frequencies of four prominent stretching modes of flavin’s isoalloxazine ring in the diagnostic 1450–1750 cm−1 range but poorly reproduced the relative band intensities. Here, we extend our studies on this system and account for solvation through a series of increasingly sophisticated models. Only by combining elements of QM clusters, QM/MM, and PCM approaches do we obtain an improved agreement with the experiment. The study sheds light more generally on factors that can impact the computed frequencies and intensities of IR bands in solution. 
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  6. Photoelectron angular distributions (PADs) in SO − photodetachment using linearly polarized 355 nm (3.49 eV), 532 nm (2.33 eV), and 611 nm (2.03 eV) light were investigated via photoelectron imaging spectroscopy. The measurements at 532 and 611 nm access the X 3 Σ − and a 1 Δ electronic states of SO, whereas the measurements at 355 nm also access the b 1 Σ + state. In aggregate, the photoelectron anisotropy parameter values follow the general trend with respect to electron kinetic energy (eKE) expected for π*-orbital photodetachment. The trend is similar to O 2 − , but the minimum of the SO − curve is shifted to smaller eKE. This shift is mainly attributed to the exit-channel interactions of the departing electron with the dipole moment of the neutral SO core, rather than the differing shapes of the SO − and O 2 − molecular orbitals. Of the several ab initio models considered, two approaches yield good agreement with the experiment: one representing the departing electron as a superposition of eigenfunctions of a point dipole-field Hamiltonian, and another describing the outgoing electron in terms of Coulomb waves originating from two separated charge centers, with a partial positive charge on the sulfur and an equal negative charge on the oxygen. These fundamentally related approaches support the conclusion that electron–dipole interactions in the exit channel of SO − photodetachment play an important role in shaping the PADs. While a similar conclusion was previously reached for photodetachment from σ orbitals of CN − (Hart, Lyle, Spellberg, Krylov, Mabbs, J. Phys. Chem. Lett. , 2021, 12 , 10086–10092), the present work includes the first extension of the dipole-field model to detachment from π* orbitals. 
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